All modules for which code is available
- builtins
- matchms.Fingerprints
- matchms.FragmentCollection
- matchms.Fragments
- matchms.Metadata
- matchms.MetadataCollection
- matchms.Pipeline
- matchms.Scores
- matchms.SpectraCollection
- matchms.Spectrum
- matchms.calculate_scores
- matchms.exporting.metadata_export
- matchms.exporting.save_as_json
- matchms.exporting.save_as_mgf
- matchms.exporting.save_as_msp
- matchms.exporting.save_as_mzspeclib
- matchms.exporting.save_spectra
- matchms.filtering.SpeciesString
- matchms.filtering.SpectraCollectionProcessor
- matchms.filtering.SpectrumProcessor
- matchms.filtering.default_filters
- matchms.filtering.filter_utils.derive_precursor_mz_and_parent_mass
- matchms.filtering.filter_utils.get_neutral_mass_from_smiles
- matchms.filtering.filter_utils.interpret_unknown_adduct
- matchms.filtering.filter_utils.load_known_adducts
- matchms.filtering.filter_utils.metadata_conversions
- matchms.filtering.filter_utils.smile_inchi_inchikey_conversions
- matchms.filtering.metadata_processing.harmonize_undefined_inchi
- matchms.filtering.metadata_processing.harmonize_undefined_inchikey
- matchms.filtering.metadata_processing.harmonize_undefined_smiles
- matchms.hashing
- matchms.importing.load_from_json
- matchms.importing.load_from_mgf
- matchms.importing.load_from_msp
- matchms.importing.load_from_mzml
- matchms.importing.load_from_mzxml
- matchms.importing.load_from_pickle
- matchms.importing.load_from_usi
- matchms.importing.load_spectra
- matchms.importing.parsing_utils
- matchms.logging_functions
- matchms.networking.SimilarityNetwork
- matchms.networking.networking_functions
- matchms.plotting.spectrum_plots
- matchms.reference_spectra.aspirin
- matchms.reference_spectra.cocaine
- matchms.reference_spectra.glucose
- matchms.reference_spectra.hydroxy_cholesterol
- matchms.reference_spectra.phenylalanine
- matchms.reference_spectra.salicin
- matchms.similarity.BaseEmbeddingSimilarity
- matchms.similarity.BaseSimilarity
- matchms.similarity.BinnedEmbeddingSimilarity
- matchms.similarity.Cosine
- matchms.similarity.CosineBlink
- matchms.similarity.CosineGreedy
- matchms.similarity.CosineHungarian
- matchms.similarity.CosineLinear
- matchms.similarity.FingerprintSimilarity
- matchms.similarity.FlashSimilarity
- matchms.similarity.MetadataMatch
- matchms.similarity.ModifiedCosine
- matchms.similarity.ModifiedCosineGreedy
- matchms.similarity.ModifiedCosineHungarian
- matchms.similarity.NeutralLossesCosine
- matchms.similarity.ParentMassMatch
- matchms.similarity.PrecursorMzMatch
- matchms.similarity.cosine_linear_functions
- matchms.similarity.spectrum_similarity_functions
- matchms.similarity.vector_similarity_functions
- matchms.utils
- matchms.yaml_file_functions
- pandas._libs.properties