Python Module Index

m


	m
	`matchms`
	`matchms.calculate_scores`
	`matchms.constants`
	`matchms.exporting`
	`matchms.exporting.metadata_export`
	`matchms.exporting.save_as_json`
	`matchms.exporting.save_as_mgf`
	`matchms.exporting.save_as_msp`
	`matchms.exporting.save_spectra`
	`matchms.filtering`
	`matchms.filtering.default_filters`
	`matchms.filtering.default_pipelines`
	`matchms.filtering.filter_order`
	`matchms.filtering.filter_utils`
	`matchms.filtering.filter_utils.derive_precursor_mz_and_parent_mass`
	`matchms.filtering.filter_utils.get_neutral_mass_from_smiles`
	`matchms.filtering.filter_utils.interpret_unknown_adduct`
	`matchms.filtering.filter_utils.load_known_adducts`
	`matchms.filtering.filter_utils.smile_inchi_inchikey_conversions`
	`matchms.filtering.metadata_processing`
	`matchms.filtering.metadata_processing.add_compound_name`
	`matchms.filtering.metadata_processing.add_fingerprint`
	`matchms.filtering.metadata_processing.add_parent_mass`
	`matchms.filtering.metadata_processing.add_precursor_mz`
	`matchms.filtering.metadata_processing.add_retention`
	`matchms.filtering.metadata_processing.clean_adduct`
	`matchms.filtering.metadata_processing.clean_compound_name`
	`matchms.filtering.metadata_processing.correct_charge`
	`matchms.filtering.metadata_processing.derive_adduct_from_name`
	`matchms.filtering.metadata_processing.derive_annotation_from_compound_name`
	`matchms.filtering.metadata_processing.derive_formula_from_name`
	`matchms.filtering.metadata_processing.derive_inchi_from_smiles`
	`matchms.filtering.metadata_processing.derive_inchikey_from_inchi`
	`matchms.filtering.metadata_processing.derive_ionmode`
	`matchms.filtering.metadata_processing.derive_smiles_from_inchi`
	`matchms.filtering.metadata_processing.harmonize_undefined_inchi`
	`matchms.filtering.metadata_processing.harmonize_undefined_inchikey`
	`matchms.filtering.metadata_processing.harmonize_undefined_smiles`
	`matchms.filtering.metadata_processing.interpret_pepmass`
	`matchms.filtering.metadata_processing.make_charge_int`
	`matchms.filtering.metadata_processing.repair_adduct_based_on_smiles`
	`matchms.filtering.metadata_processing.repair_inchi_inchikey_smiles`
	`matchms.filtering.metadata_processing.repair_not_matching_annotation`
	`matchms.filtering.metadata_processing.repair_parent_mass_is_mol_wt`
	`matchms.filtering.metadata_processing.repair_parent_mass_match_smiles_wrapper`
	`matchms.filtering.metadata_processing.repair_precursor_is_parent_mass`
	`matchms.filtering.metadata_processing.repair_smiles_of_salts`
	`matchms.filtering.metadata_processing.require_correct_ionmode`
	`matchms.filtering.metadata_processing.require_parent_mass_match_smiles`
	`matchms.filtering.metadata_processing.require_precursor_below_mz`
	`matchms.filtering.metadata_processing.require_precursor_mz`
	`matchms.filtering.metadata_processing.require_valid_annotation`
	`matchms.filtering.peak_processing`
	`matchms.filtering.peak_processing.add_losses`
	`matchms.filtering.peak_processing.normalize_intensities`
	`matchms.filtering.peak_processing.reduce_to_number_of_peaks`
	`matchms.filtering.peak_processing.remove_peaks_around_precursor_mz`
	`matchms.filtering.peak_processing.remove_peaks_outside_top_k`
	`matchms.filtering.peak_processing.require_minimum_number_of_high_peaks`
	`matchms.filtering.peak_processing.require_minimum_number_of_peaks`
	`matchms.filtering.peak_processing.select_by_intensity`
	`matchms.filtering.peak_processing.select_by_mz`
	`matchms.filtering.peak_processing.select_by_relative_intensity`
	`matchms.filtering.SpeciesString`
	`matchms.filtering.SpectrumProcessor`
	`matchms.Fragments`
	`matchms.hashing`
	`matchms.importing`
	`matchms.importing.load_from_json`
	`matchms.importing.load_from_mgf`
	`matchms.importing.load_from_msp`
	`matchms.importing.load_from_mzml`
	`matchms.importing.load_from_mzxml`
	`matchms.importing.load_from_pickle`
	`matchms.importing.load_from_usi`
	`matchms.importing.load_scores`
	`matchms.importing.load_spectra`
	`matchms.importing.parsing_utils`
	`matchms.logging_functions`
	`matchms.Metadata`
	`matchms.networking`
	`matchms.networking.networking_functions`
	`matchms.networking.SimilarityNetwork`
	`matchms.Pipeline`
	`matchms.plotting`
	`matchms.plotting.spectrum_plots`
	`matchms.Scores`
	`matchms.similarity`
	`matchms.similarity.BaseSimilarity`
	`matchms.similarity.CosineGreedy`
	`matchms.similarity.CosineHungarian`
	`matchms.similarity.FingerprintSimilarity`
	`matchms.similarity.IntersectMz`
	`matchms.similarity.MetadataMatch`
	`matchms.similarity.ModifiedCosine`
	`matchms.similarity.NeutralLossesCosine`
	`matchms.similarity.ParentMassMatch`
	`matchms.similarity.PrecursorMzMatch`
	`matchms.similarity.spectrum_similarity_functions`
	`matchms.similarity.vector_similarity_functions`
	`matchms.Spectrum`
	`matchms.Spikes`
	`matchms.typing`
	`matchms.utils`
	`matchms.yaml_file_functions`

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