All modules for which code is available
- builtins
- matchms.Fragments
- matchms.Metadata
- matchms.Pipeline
- matchms.Scores
- matchms.Spectrum
- matchms.Spikes
- matchms.calculate_scores
- matchms.exporting.metadata_export
- matchms.exporting.save_as_json
- matchms.exporting.save_as_mgf
- matchms.exporting.save_as_msp
- matchms.exporting.save_spectra
- matchms.filtering.SpeciesString
- matchms.filtering.SpectrumProcessor
- matchms.filtering.default_filters
- matchms.filtering.filter_utils.derive_precursor_mz_and_parent_mass
- matchms.filtering.filter_utils.get_neutral_mass_from_smiles
- matchms.filtering.filter_utils.interpret_unknown_adduct
- matchms.filtering.filter_utils.load_known_adducts
- matchms.filtering.filter_utils.smile_inchi_inchikey_conversions
- matchms.filtering.metadata_processing.add_compound_name
- matchms.filtering.metadata_processing.add_fingerprint
- matchms.filtering.metadata_processing.add_parent_mass
- matchms.filtering.metadata_processing.add_precursor_mz
- matchms.filtering.metadata_processing.add_retention
- matchms.filtering.metadata_processing.clean_adduct
- matchms.filtering.metadata_processing.clean_compound_name
- matchms.filtering.metadata_processing.correct_charge
- matchms.filtering.metadata_processing.derive_adduct_from_name
- matchms.filtering.metadata_processing.derive_annotation_from_compound_name
- matchms.filtering.metadata_processing.derive_formula_from_name
- matchms.filtering.metadata_processing.derive_inchi_from_smiles
- matchms.filtering.metadata_processing.derive_inchikey_from_inchi
- matchms.filtering.metadata_processing.derive_ionmode
- matchms.filtering.metadata_processing.derive_smiles_from_inchi
- matchms.filtering.metadata_processing.harmonize_undefined_inchi
- matchms.filtering.metadata_processing.harmonize_undefined_inchikey
- matchms.filtering.metadata_processing.harmonize_undefined_smiles
- matchms.filtering.metadata_processing.interpret_pepmass
- matchms.filtering.metadata_processing.make_charge_int
- matchms.filtering.metadata_processing.repair_adduct_based_on_smiles
- matchms.filtering.metadata_processing.repair_inchi_inchikey_smiles
- matchms.filtering.metadata_processing.repair_not_matching_annotation
- matchms.filtering.metadata_processing.repair_parent_mass_is_mol_wt
- matchms.filtering.metadata_processing.repair_parent_mass_match_smiles_wrapper
- matchms.filtering.metadata_processing.repair_precursor_is_parent_mass
- matchms.filtering.metadata_processing.repair_smiles_of_salts
- matchms.filtering.metadata_processing.require_correct_ionmode
- matchms.filtering.metadata_processing.require_parent_mass_match_smiles
- matchms.filtering.metadata_processing.require_precursor_below_mz
- matchms.filtering.metadata_processing.require_precursor_mz
- matchms.filtering.metadata_processing.require_valid_annotation
- matchms.filtering.peak_processing.add_losses
- matchms.filtering.peak_processing.normalize_intensities
- matchms.filtering.peak_processing.reduce_to_number_of_peaks
- matchms.filtering.peak_processing.remove_peaks_around_precursor_mz
- matchms.filtering.peak_processing.remove_peaks_outside_top_k
- matchms.filtering.peak_processing.require_minimum_number_of_high_peaks
- matchms.filtering.peak_processing.require_minimum_number_of_peaks
- matchms.filtering.peak_processing.select_by_intensity
- matchms.filtering.peak_processing.select_by_mz
- matchms.filtering.peak_processing.select_by_relative_intensity
- matchms.hashing
- matchms.importing.load_from_json
- matchms.importing.load_from_mgf
- matchms.importing.load_from_msp
- matchms.importing.load_from_mzml
- matchms.importing.load_from_mzxml
- matchms.importing.load_from_pickle
- matchms.importing.load_from_usi
- matchms.importing.load_scores
- matchms.importing.load_spectra
- matchms.importing.parsing_utils
- matchms.logging_functions
- matchms.networking.SimilarityNetwork
- matchms.networking.networking_functions
- matchms.plotting.spectrum_plots
- matchms.similarity.BaseSimilarity
- matchms.similarity.CosineGreedy
- matchms.similarity.CosineHungarian
- matchms.similarity.FingerprintSimilarity
- matchms.similarity.IntersectMz
- matchms.similarity.MetadataMatch
- matchms.similarity.ModifiedCosine
- matchms.similarity.NeutralLossesCosine
- matchms.similarity.ParentMassMatch
- matchms.similarity.PrecursorMzMatch
- matchms.similarity.spectrum_similarity_functions
- matchms.similarity.vector_similarity_functions
- matchms.utils
- matchms.yaml_file_functions